Endometriosis Knowledgebase


A repository for genes associated with endometriosis

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Gene id 4583
Gene Summary     SNPs            KEGG pathways    Diseases    PubMed references    

Gene Summary

Gene Symbol MUC2   Gene   UCSC   Ensembl
Aliases MLP, MUC-2, SMUC
Gene name mucin 2, oligomeric mucus/gel-forming
Alternate names mucin-2, mucin 2, intestinal/tracheal,
Gene location 11p15.5 (1074874: 1110507)     Exons: 51     NC_000011.10
Gene summary(Entrez) This gene encodes a member of the mucin protein family. Mucins are high molecular weight glycoproteins produced by many epithelial tissues. The protein encoded by this gene is secreted and forms an insoluble mucous barrier that protects the gut lumen. The protein polymerizes into a gel of which 80% is composed of oligosaccharide side chains by weight. The protein features a central domain containing tandem repeats rich in threonine and proline that varies between 50 and 115 copies in different individuals. Downregulation of this gene has been observed in patients with Crohn disease and ulcerative colitis. [provided by RefSeq, Oct 2016]
OMIM 158370

SNPs

rs2856111

Strand: +   Allele origin: unknown  Allele change: C/T   Mutation type: snp

  
NC_000011.9   g.1075747T>C
NC_000011.10   g.1075747C>T
NG_051929.1   g.5873T=
NG_051929.1   g.5873T>C
NM_002457.4   c.173T=
NM_002457.4   c.173T>C
NT_187681.1   g.150140T=
NT_187681.1   g.150140T>C
NP_002448.4   p.Leu58=
NP_002448.4   p.Leu58Pro
  
rs7103978

Strand: -   Allele origin: unknown  Allele change: A/C/T   Mutation type: snp

  
NC_000011.10   g.1090879A>G
NC_000011.10   g.1090879A>T
NC_000011.9   g.1088815A>G
NG_051929.1   g.19518A>G
NG_051929.1   g.19518A>T
NM_002457.4   c.3600A>G
NM_002457.4   c.3600A>T
NP_002448.4   p.Ala1200=
NT_187681.1   g.163208A>G
NT_187681.1   g.163208A>T
rs10794288

Strand: +   Allele origin: unknown  Allele change: C/T   Mutation type: snp

  
NC_000011.10   g.1086825C>T
NC_000011.9   g.1084821T>C
NG_051929.1   g.15524T=
NG_051929.1   g.15524T>C
NM_002457.4   c.2616T=
NM_002457.4   c.2616T>C
NT_187681.1   g.159214T=
NT_187681.1   g.159214T>C
NP_002448.4   p.Asp872=
rs10902088

Strand: +   Allele origin: unknown  Allele change: C/T   Mutation type: snp

  
NC_000011.9   g.1087972C>T
NC_000011.10   g.1090036T>C
NG_051929.1   g.18675C=
NG_051929.1   g.18675C>T
NM_002457.4   c.3447C=
NM_002457.4   c.3447C>T
NT_187681.1   g.162365C=
NT_187681.1   g.162365C>T
NP_002448.4   p.Asn1149=
  
rs11245936

Strand: +   Allele origin: unknown  Allele change: A/G   Mutation type: snp

  
NC_000011.10   g.1086366G>A
NC_000011.9   g.1084362G>A
NG_051929.1   g.15065G>A
NM_002457.4   c.2494G>A
NT_187681.1   g.158755G>A
NP_002448.4   p.Gly832Ser
rs11245954

Strand: +   Allele origin: unknown  Allele change: A/G   Mutation type: snp

NC_000011.10   g.1107170A>G
NC_000011.9   g.1101078A>G
NG_051929.1   g.39193A>G
NM_002457.4   c.14893A>G
NT_187681.1   g.175471A>G
NP_002448.4   p.Ser4965Gly

KEGG pathways

hsa05146  Amoebiasis
hsa05110  Vibrio cholerae infection

Diseases

Associated diseases References
Asthma PMID: 11062147
Endometriosis PMID: 22417007
Otitis media PMID: 19718741
Endometriosis associated infertility INFBASE22417007
Endometriosis INFBASE22417007

PubMed references


PMID Condition Mutation Ethnicity Population details Infertility_type Associated_genes Abstract
22417007 Endometrio
sis
MUC2 (rs2856111, rs11245936, rs10794288, rs10902088, rs7103978 and rs11245954)
391 (195 endome
triosis patient
s, 196 healthy
controls)
Female infertility MUC2
Show abstract