Endometriosis Knowledgebase


A repository for genes associated with endometriosis

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Gene id 800
Gene Summary        Protein Summary    Gene ontology    KEGG pathways    Diseases    PubMed references    

Gene Summary

Gene Symbol CALD1   Gene   UCSC   Ensembl
Aliases CDM, H-CAD, HCAD, L-CAD, LCAD, NAG22
Gene name caldesmon 1
Alternate names caldesmon, testis secretory sperm-binding protein Li 227n,
Gene location 7q33 (140558092: 140550066)     Exons: 5     NC_000005.10
Gene summary(Entrez) This gene encodes a calmodulin- and actin-binding protein that plays an essential role in the regulation of smooth muscle and nonmuscle contraction. The conserved domain of this protein possesses the binding activities to Ca(2+)-calmodulin, actin, tropomyosin, myosin, and phospholipids. This protein is a potent inhibitor of the actin-tropomyosin activated myosin MgATPase, and serves as a mediating factor for Ca(2+)-dependent inhibition of smooth muscle contraction. Alternative splicing of this gene results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2008]
OMIM 114213

Protein Summary

Protein general information Q05682  

Name: Caldesmon (CDM)

Length: 793  Mass: 93,231

Tissue specificity: High-molecular-weight caldesmon (isoform 1) is predominantly expressed in smooth muscles, whereas low-molecular-weight caldesmon (isoforms 2, 3, 4 and 5) are widely distributed in non-muscle tissues and cells. Not expressed in skeletal

Sequence MDDFERRRELRRQKREEMRLEAERIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVP
DEEAKTTTTNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAENETTEKE
EKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQVEVMVEEKTTESQEETVV
MSLKNGQISSEEPKQEEEREQGSDEISHHEKMEEEDKERAEAERARLEAEERERIKAEQDKKIADERARIEAEEK
AAAQERERREAEERERMREEEKRAAEERQRIKEEEKRAAEERQRIKEEEKRAAEERQRIKEEEKRAAEERQRARA
EEEEKAKVEEQKRNKQLEEKKHAMQETKIKGEKVEQKIEGKWVNEKKAQEDKLQTAVLKKQGEEKGTKVQAKREK
LQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKLKHTENTFSRPGGRASVDTKEAE
GAPQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKLREEEE
KRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEERAEFLNKSVQKSSGVKSTHQAAIVSKI
DSRLEQYTSAIEGTKSAKPTKPAASDLPVPAEGVRNIKSMWEKGNVFSSPTAAGTPNKETAGLKVGVSSRINEWL
TKTPDGNKSPAPKPSDLRPGDVSSKRNLWEKQSVDKVTSPTKV
Structural information
Interpro:  IPR006017 IPR006018

Pfam:  
PF02029
MINT:  
STRING:   ENSP00000354826;
Other Databases GeneCards:  CALD1;  Malacards:  CALD1

Gene ontology


GO accessionTerm nameEvidence codeGo category
GO:0003779 actin binding
IEA molecular_function
GO:0005515 protein binding
IPI molecular_function
GO:0005516 calmodulin binding
IEA molecular_function
GO:0005523 tropomyosin binding
TAS molecular_function
GO:0005829 cytosol
TAS cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005856 cytoskeleton
TAS cellular_component
GO:0005886 plasma membrane
IDA cellular_component
GO:0006928 movement of cell or subce
llular component
TAS biological_process
GO:0006936 muscle contraction
TAS biological_process
GO:0015629 actin cytoskeleton
IDA cellular_component
GO:0017022 myosin binding
IEA molecular_function
GO:0030016 myofibril
IEA cellular_component
GO:0030478 actin cap
IEA cellular_component
GO:0003779 actin binding
IEA molecular_function
GO:0003779 actin binding
IEA molecular_function
GO:0003779 actin binding
TAS molecular_function
GO:0005515 protein binding
IPI molecular_function
GO:0005516 calmodulin binding
IEA molecular_function
GO:0005516 calmodulin binding
IEA molecular_function
GO:0005516 calmodulin binding
TAS molecular_function
GO:0005523 tropomyosin binding
TAS molecular_function
GO:0005737 cytoplasm
IEA cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005856 cytoskeleton
IEA cellular_component
GO:0005856 cytoskeleton
IEA cellular_component
GO:0005856 cytoskeleton
TAS cellular_component
GO:0005856 cytoskeleton
TAS cellular_component
GO:0005886 plasma membrane
IDA cellular_component
GO:0006928 movement of cell or subce
llular component
TAS biological_process
GO:0006936 muscle contraction
IEA biological_process
GO:0006936 muscle contraction
TAS biological_process
GO:0015629 actin cytoskeleton
IDA cellular_component
GO:0016020 membrane
IEA cellular_component
GO:0017022 myosin binding
IEA molecular_function
GO:0030016 myofibril
IEA cellular_component
GO:0030478 actin cap
IEA cellular_component
GO:0003779 actin binding
TAS molecular_function
GO:0005515 protein binding
IPI molecular_function
GO:0005516 calmodulin binding
TAS molecular_function
GO:0005523 tropomyosin binding
TAS molecular_function
GO:0005829 cytosol
TAS cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005829 cytosol
TAS cellular_component
GO:0005856 cytoskeleton
TAS cellular_component
GO:0005856 cytoskeleton
TAS cellular_component
GO:0005886 plasma membrane
IDA cellular_component
GO:0006928 movement of cell or subce
llular component
TAS biological_process
GO:0006936 muscle contraction
TAS biological_process
GO:0015629 actin cytoskeleton
IDA cellular_component

KEGG pathways

hsa04270  Vascular smooth muscle contraction

Diseases

Associated diseases References
Nephropathy GAD15047636
Diabetes GAD12187087
Endometriosis PubMed23575144

PubMed references


PMID Condition Mutation Ethnicity Population details Infertility_type Associated_genes Abstract
23575144 Endometrio
sis



Show abstract